IEB HPC Cluster

Welcome to the IEB HPC Cluster documentation. These pages cover layout, access, partitions, Slurm, software modules, containers, MPI, live status and a catalog of bioinformatics tools installed on the NGS server.

Quick links

• IEB Cluster Layout
• InfiniBand Fabrics
• Quota Implementation
• Partitions & Time Limits
• Slurm Templates
• Modules
• Using Containers
• Message Parsing Interface
• Bioinformatics Software Catalog
• R Scripts on HPC
• Grafana

Access & login (starter)

• Access from Linux or MacOS via SSH to slurm.ueb.cas.cz.
• Access from MS Windows — network support in Windows has been and remains (to say the least) dismal; use third-party programs. Bitvise SSH Client works best.
• Access trough graphical programs like Remote Destop, Mac Screen Sharing, X-Win etc. is not supported.